GeneAbundanceGOstatby Tim Beißbarth
beissbarth@wehi.edu.au
To submit Group IDs either upload a text file or paste into the text area:
Format: (comparison of expression levels)
ID log(Abundance1) log(Abundance2) or ID log(Ratio)

File:
Text:
Available GO gene-association databases
Details


Minimal length of considered GO paths:
e.g. "biological_process"=1, "biological_process%behavior"=2


Subset of GO hierarchy:
Limit search to subset of GO hierarchy that contains a keyword, e.g. "biological_process", "molecular_function", "cellular_component"


Minimal log ratio in GO output list:


Maximum number of GOs/groups to display:


Show Over-/Underrepresenteted GOs:


Cluster GOs:
-1 => do not cluster.
Merge GOs if indicating gene lists are inclusions or differ by less than # genes


Display Format:



GeneAbundanceGOstat sums up the log abundances or log ratios provided in the input list and sorts the GOs present in the list according to the summed log ratios. As used in Boon et al., PNAS, 2004, in press.