GeneAbundanceGOstat	by Tim Beißbarth beissbarth@wehi.edu.au
To submit Group IDs either upload a text file or paste into the text area: Format: (comparison of expression levels) ID log(Abundance1) log(Abundance2) or ID log(Ratio) File: Text:	Available GO gene-association databases Details cgdddbdictyBasefbGeneDB_LmajorGeneDB_PfalciparumGeneDB_SpombeGeneDB_TbruceiGeneDB_tsetsegoa_chickengoa_cowgoa_humangoa_pdbgoa_uniprotgramene_oryzamgiProbe2Gopseudocaprgdsgdtairtigr_Aphagocytophilumtigr_Banthracistigr_Cburnetiitigr_Chydrogenoformanstigr_Cjejunitigr_Cperfringenstigr_Cpsychrerythraeatigr_Dethenogenestigr_Echaffeensistigr_Gsulfurreducenstigr_Hneptuniumtigr_Lmonocytogenestigr_Mcapsulatustigr_Nsennetsutigr_Pfluorescenstigr_Psyringaetigr_Psyringae_phaseolicolatigr_Soneidensistigr_Spomeroyitigr_Tbrucei_chr2tigr_Vcholeraewbzfin Minimal length of considered GO paths: e.g. "biological_process"=1, "biological_process%behavior"=2 12345 Subset of GO hierarchy: Limit search to subset of GO hierarchy that contains a keyword, e.g. "biological_process", "molecular_function", "cellular_component" Minimal log ratio in GO output list: 210.50 Maximum number of GOs/groups to display: 110305010010000 Show Over-/Underrepresenteted GOs: Over- and UnderrepresentedShow Overrepresented onlyShow Underrepresented only Cluster GOs: -1 => do not cluster. Merge GOs if indicating gene lists are inclusions or differ by less than # genes -101234510 Display Format: HTML, Stats and Go AnnotationHTML, GO Stats onlyHTML, GO Annotation onlyTEXT, Stats and Go AnnotationTEXT, GO Stats onlyTEXT, GO Annotation only
GeneAbundanceGOstat sums up the log abundances or log ratios provided in the input list and sorts the GOs present in the list according to the summed log ratios. As used in Boon et al., PNAS, 2004, in press.